PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07074.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 168aa    MW: 18888.2 Da    PI: 9.6396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07074.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-202273156
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             ++y+GVr ++ +gr++AeIrdp++   ++r++lg+f+t+e Aa+a+++a+++++g+
  Rsa1.0_07074.1_g00002.1 22 TRYRGVRKRP-WGRYAAEIRDPYK---KTRVWLGTFDTPEAAARAYDRAALRFRGA 73
                             68********.**********765...6*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.10E-222282No hitNo description
PfamPF008478.1E-142272IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-232381IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-312381IPR001471AP2/ERF domain
SMARTSM003806.4E-362386IPR001471AP2/ERF domain
PROSITE profilePS5103224.6322380IPR001471AP2/ERF domain
PRINTSPR003676.1E-112435IPR001471AP2/ERF domain
PRINTSPR003676.1E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAPTVQTAVV NTNRGDGRIK ETRYRGVRKR PWGRYAAEIR DPYKKTRVWL GTFDTPEAAA  60
RAYDRAALRF RGAKAKTNFP YTYVVDNNES PTQSSTVESS SILDLNLGSV GSIFPFPEIQ  120
VKHGMILFGE ESTRSESDSS SVVMDLSPER RSRVFLDLDL NLPPKPED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-222080263ATERF1
3gcc_A6e-222080263ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00164DAPTransfer from AT1G28370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686601.14e-80PREDICTED: ethylene-responsive transcription factor 11-like
SwissprotQ9C5I39e-57ERF76_ARATH; Ethylene-responsive transcription factor 11
TrEMBLA0A078FTM45e-80A0A078FTM4_BRANA; BnaA07g08440D protein
STRINGBra030095.1-P5e-79(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-45ERF domain protein 11